Antigen

Antigen Class

TFs and others

Antigen

JUND

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

JunD

antibody antibodydescription

rabbit polyclonal IgG. Antibody Target: JunD

antibody targetdescription

The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-74

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000771

Sequenced DNA Library

library_name

GSM1003634: Stanford_ChipSeq_GM12878_JunD_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

46592723

Reads aligned (%)

94.8

Duplicates removed (%)

10.4

Number of peaks

6653 (qval < 1E-05)

hg19

Number of total reads

46592723

Reads aligned (%)

94.0

Duplicates removed (%)

11.7

Number of peaks

6902 (qval < 1E-05)