Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JUND

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
SK-N-SH
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
SK-N-SH
cell organism
human
cell description
neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
JunD
antibody antibodydescription
rabbit polyclonal IgG. Antibody Target: JunD
antibody targetdescription
The protein encoded by this intronless gene is a member of the JUN family, and a functional component of the AP1 transcription factor complex. It has been proposed to protect cells from p53-dependent senescence and apoptosis. Alternate translation initiation site usage results in the production of different isoforms. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-74
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH003393

Sequenced DNA Library

library_name
GSM1003632: Stanford_ChipSeq_SK-N-SH_JunD_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
56001976
Reads aligned (%)
85.8
Duplicates removed (%)
8.4
Number of peaks
37906 (qval < 1E-05)

hg38

Number of total reads
56001976
Reads aligned (%)
87.7
Duplicates removed (%)
7.2
Number of peaks
37984 (qval < 1E-05)

Base call quality data from DBCLS SRA