Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MXI1

Cell type

Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma

Attributes by original data submitter

Sample

source_name
SK-N-SH
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
SK-N-SH
cell organism
human
cell description
neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
Mxi1_(AF4185)
antibody antibodydescription
Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1
antibody targetdescription
Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX
antibody vendorname
R&D Systems
antibody vendorid
AF4185
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH003393

Sequenced DNA Library

library_name
GSM1003631: Stanford_ChipSeq_SK-N-SH_Mxi1_(AF4185)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
60955077
Reads aligned (%)
84.1
Duplicates removed (%)
12.2
Number of peaks
48520 (qval < 1E-05)

hg38

Number of total reads
60955077
Reads aligned (%)
85.6
Duplicates removed (%)
11.2
Number of peaks
48694 (qval < 1E-05)

Base call quality data from DBCLS SRA