Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HCFC1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
HCFC1_(NB100-68209)
antibody antibodydescription
Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1
antibody targetdescription
The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).
antibody vendorname
NovusBio
antibody vendorid
NB100-68209
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001795
labversion
PeakSeq1.0

Sequenced DNA Library

library_name
GSM1003625: Stanford_ChipSeq_K562_HCFC1_(NB100-68209)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
52670140
Reads aligned (%)
88.2
Duplicates removed (%)
8.7
Number of peaks
17271 (qval < 1E-05)

hg38

Number of total reads
52670140
Reads aligned (%)
89.7
Duplicates removed (%)
7.7
Number of peaks
17061 (qval < 1E-05)

Base call quality data from DBCLS SRA