Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF274

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
lab
USC
lab description
Farnham - University of Southern California
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
treatment
None
treatment description
No special treatment or protocol applies
antibody
ZNF274_(M01)
antibody antibodydescription
Mouse monoclonal antibody raised against a partial recombinant ZNF274 (corresponding to amino acids 420-531 of the human ZNF274 protein). Antibody Target: ZNF274
antibody targetdescription
ZNF274 is a zinc finger protein containing five C2H2-type zinc finger domains, two Kruppel-associated box A (KRABA) domains, and a leucine-rich SCAN domain. The encoded protein has been suggested to be a transcriptional repressor and interacts with the KAP1 corepressor complex.
antibody vendorname
Abnova ZNF74
antibody vendorid
H00010782-M01
control
UCDavis
control description
Input library was prepared at UC Davis.
control
UCDavis
control description
Input library was prepared at UC Davis.
controlid
wgEncodeEH001751
labversion
PeakSeq1.0

Sequenced DNA Library

library_name
GSM1003619: USC_ChipSeq_H1-hESC_ZNF274_(M01)_UCDavis
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
46754656
Reads aligned (%)
89.9
Duplicates removed (%)
7.9
Number of peaks
2410 (qval < 1E-05)

hg38

Number of total reads
46754656
Reads aligned (%)
92.1
Duplicates removed (%)
6.5
Number of peaks
2431 (qval < 1E-05)

Base call quality data from DBCLS SRA