Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HCFC1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
HCFC1_(NB100-68209)
antibody antibodydescription
Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1
antibody targetdescription
The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).
antibody vendorname
NovusBio
antibody vendorid
NB100-68209
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH000744

Sequenced DNA Library

library_name
GSM1003618: Stanford_ChipSeq_HeLa-S3_HCFC1_(NB100-68209)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
48696280
Reads aligned (%)
87.4
Duplicates removed (%)
10.8
Number of peaks
13469 (qval < 1E-05)

hg38

Number of total reads
48696280
Reads aligned (%)
89.4
Duplicates removed (%)
9.4
Number of peaks
13427 (qval < 1E-05)

Base call quality data from DBCLS SRA