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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HCFC1
wikigenes
PDBj
CellType: HeLa
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX186623
GSM1003618: Stanford ChipSeq HeLa-S3 HCFC1 (NB100-68209) IgG-rab
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HCFC1
Cell type
Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
HeLa-S3
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HeLa-S3
cell organism
human
cell description
cervical carcinoma
cell karyotype
cancer
cell lineage
ectoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
HCFC1_(NB100-68209)
antibody antibodydescription
Rabbit polyclonalantibody against residue 1700 and 1750 of human host cell factor C1
antibody targetdescription
The epitope recognized by this antibody maps to a region between residue 1700 and 1750 of human host cell factor C1 (VP16-accessory protein).
antibody vendorname
NovusBio
antibody vendorid
NB100-68209
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH000744
Sequenced DNA Library
library_name
GSM1003618: Stanford_ChipSeq_HeLa-S3_HCFC1_(NB100-68209)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
48696280
Reads aligned (%)
98.7
Duplicates removed (%)
9.4
Number of peaks
13427 (qval < 1E-05)
hg19
Number of total reads
48696280
Reads aligned (%)
98.0
Duplicates removed (%)
10.8
Number of peaks
13469 (qval < 1E-05)
Base call quality data from
DBCLS SRA