Antigen

Antigen Class

TFs and others

Antigen

SREBF1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

lab

Stanford

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12878

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

treatment

None

treatment description

No special treatment or protocol applies

antibody

SREBP1

antibody antibodydescription

Rabbit polyclonal. Antibody Target: SREBP1

antibody targetdescription

Sterol regulatory element binding transcription factor 1

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-8984

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

wgEncodeEH000771

Sequenced DNA Library

library_name

GSM1003617: Stanford_ChipSeq_GM12878_SREBP1_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

64306355

Reads aligned (%)

98.1

Duplicates removed (%)

14.2

Number of peaks

3743 (qval < 1E-05)

hg19

Number of total reads

64306355

Reads aligned (%)

97.3

Duplicates removed (%)

15.4

Number of peaks

2918 (qval < 1E-05)