Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MXI1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
IMR90
cell organism
human
cell description
fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
endoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
Mxi1_(AF4185)
antibody antibodydescription
Goat IgG. Raised against E. coli-derived rhMxi1. Antibody Target: Mxi1
antibody targetdescription
Transcriptional repressor. Binds with MAX to form recognize the core sequence 5'-CAC[GA]TG-3', antagonizes MYC transcriptional activity by competing for MAX
antibody vendorname
R&D Systems
antibody vendorid
AF4185
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH002808

Sequenced DNA Library

library_name
GSM1003614: Stanford_ChipSeq_IMR90_Mxi1_(AF4185)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
57886388
Reads aligned (%)
67.4
Duplicates removed (%)
23.9
Number of peaks
22140 (qval < 1E-05)

hg38

Number of total reads
57886388
Reads aligned (%)
69.1
Duplicates removed (%)
22.5
Number of peaks
22028 (qval < 1E-05)

Base call quality data from DBCLS SRA