Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MAZ

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
IMR90
cell organism
human
cell description
fetal lung fibroblasts, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
endoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
MAZ_(ab85725)
antibody antibodydescription
Rabbit polyclonal, immunogen is synthetic peptide, corresponding to a region within amino acids 427-477 of Human MAZ, GenBank BAA33064.1. Antibody Target: MAZ
antibody targetdescription
May function as a transcription factor with dual roles in transcription initiation and termination. Binds to two sites, ME1a1 and ME1a2, within the MYC promoter having greater affinity for the former. Also binds to multiple G/C-rich sites within the promoter of the Sp1 family of transcription factors.
antibody vendorname
Abcam
antibody vendorid
ab85725
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH002808

Sequenced DNA Library

library_name
GSM1003613: Stanford_ChipSeq_IMR90_MAZ_(ab85725)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
60420926
Reads aligned (%)
71.8
Duplicates removed (%)
21.9
Number of peaks
31737 (qval < 1E-05)

hg38

Number of total reads
60420926
Reads aligned (%)
73.7
Duplicates removed (%)
20.4
Number of peaks
31803 (qval < 1E-05)

Base call quality data from DBCLS SRA