Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZMIZ1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
ZNF-MIZD-CP1_(ab65767)
antibody antibodydescription
Rabbit Polyclonal against synthetic peptide conjugated to KLH derived from within residues 200 - 300 of Human Zinc finger MIZ domain-containing protein 1.
antibody targetdescription
Zinc finger MIZ domain-containing protein 1 that increases ligand-dependent transcriptional activity of AR and promotes AR sumoylation. The stimulation of AR activity is dependent upon sumoylation.
antibody vendorname
Abcam
antibody vendorid
ab65767
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001795
labversion
PeakSeq1.0

Sequenced DNA Library

library_name
GSM1003611: Stanford_ChipSeq_K562_ZNF-MIZD-CP1_(ab65767)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
55182366
Reads aligned (%)
89.8
Duplicates removed (%)
6.2
Number of peaks
11920 (qval < 1E-05)

hg38

Number of total reads
55182366
Reads aligned (%)
91.4
Duplicates removed (%)
5.2
Number of peaks
12030 (qval < 1E-05)

Base call quality data from DBCLS SRA