Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZC3H11A

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
ZC3H11A_(NB100-74650)
antibody antibodydescription
Rabbit polyclonal antibody. The immunogen recognized by this antibody maps to a region between residue 250 and 300 of human zinc finger CCCH-type containing 11A.
antibody targetdescription
ZC3H11A is a C3H1-type zinc finger protein. ZC3H11A has been identified as a protein that is phosphorylated upon DNA damage by ATM or ATR. The function of ZC3H11A remains uncharacterized.
antibody vendorname
NovusBio
antibody vendorid
NB100-74650
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH001795
labversion
PeakSeq1.0

Sequenced DNA Library

library_name
GSM1003610: Stanford_ChipSeq_K562_ZC3H11A_(NB100-74650)_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
56094324
Reads aligned (%)
90.0
Duplicates removed (%)
5.9
Number of peaks
1808 (qval < 1E-05)

hg38

Number of total reads
56094324
Reads aligned (%)
91.8
Duplicates removed (%)
4.8
Number of peaks
1732 (qval < 1E-05)

Base call quality data from DBCLS SRA