Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
K562
cell organism
human
cell description
leukemia, "The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises." - ATCC
cell karyotype
cancer
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
GATA1_(SC-266)
antibody antibodydescription
Rat monoclonal raised against bacterially expressed murine GATA-1. Antibody Target: GATA1
antibody targetdescription
GATA1 is erythroid-specific and is responsible for the regulated transcription of erythroid genes.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-266
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
controlid
wgEncodeEH000726

Sequenced DNA Library

library_name
GSM1003608: Stanford_ChipSeq_K562_GATA1_(SC-266)_IgG-mus
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
52670069
Reads aligned (%)
76.8
Duplicates removed (%)
14.2
Number of peaks
16129 (qval < 1E-05)

hg38

Number of total reads
52670069
Reads aligned (%)
78.4
Duplicates removed (%)
13.1
Number of peaks
16147 (qval < 1E-05)

Base call quality data from DBCLS SRA