Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SREBF2

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
lab
Stanford
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
GM12878
cell organism
human
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
treatment
None
treatment description
No special treatment or protocol applies
antibody
SREBP2
antibody antibodydescription
Rabbit polyclonal. Antibody Target: SREBP2
antibody targetdescription
Sterol regulatory element binding transcription factor 2
antibody vendorname
Cayman Chemical
antibody vendorid
10007663
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
wgEncodeEH000771

Sequenced DNA Library

library_name
GSM1003603: Stanford_ChipSeq_GM12878_SREBP2_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
63661411
Reads aligned (%)
83.7
Duplicates removed (%)
13.5
Number of peaks
2204 (qval < 1E-05)

hg38

Number of total reads
63661411
Reads aligned (%)
85.6
Duplicates removed (%)
12.3
Number of peaks
1978 (qval < 1E-05)

Base call quality data from DBCLS SRA