SRX186552
GSM1003601: KD-Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells, Kdm2b shRNA, input
cell line
E14
cell type
embryonic stem cells (ESCs)
shRNA
shKdm2b
shRNA sequence
CGCTGTGGAAATATCTGTCAT
chip antibody
none

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52892019
Reads aligned (%)
96.9
Duplicates removed (%)
21.8
Number of peaks
5552 (qval < 1E-05)

mm9

Number of total reads
52892019
Reads aligned (%)
96.5
Duplicates removed (%)
21.7
Number of peaks
5368 (qval < 1E-05)

Base call quality data from DBCLS SRA