SRX186546
GSM1003595: WT-Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells, WT, input
cell line
V6.5
cell type
embryonic stem cells (ESCs)
shRNA
none
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
37995537
Reads aligned (%)
69.0
Duplicates removed (%)
8.8
Number of peaks
527 (qval < 1E-05)

mm9

Number of total reads
37995537
Reads aligned (%)
68.9
Duplicates removed (%)
8.9
Number of peaks
544 (qval < 1E-05)

Base call quality data from DBCLS SRA