SRX186172
GSM1002560: YY1 Chip-Seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Yy1

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Rag1 -/- pro-B cells
chip antibody 1
YY1
chip antibody manufacturer 1
Abcam
chip antibody 2
YY1
chip antibody manufacturer 2
Santa Cruz
strain
C57BL/6
cell type
pro-B cells
genotype
Rag -/-

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6478057
Reads aligned (%)
76.7
Duplicates removed (%)
4.3
Number of peaks
1650 (qval < 1E-05)

mm9

Number of total reads
6478057
Reads aligned (%)
76.5
Duplicates removed (%)
4.4
Number of peaks
1679 (qval < 1E-05)

Base call quality data from DBCLS SRA