ChIP-Atlas: SRX186066

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: Embryonic stem cell
tissue: Embryonic stem cell
number of cells: 1k Cells
strain: E14
ChIP: none, input-DNA

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 145853369
Reads aligned (%): 84.5
Duplicates removed (%): 70.3
Number of peaks: 62657 (qval < 1E-05)

mm9

Number of total reads: 145853369
Reads aligned (%): 84.5
Duplicates removed (%): 70.4
Number of peaks: 62770 (qval < 1E-05)

Base call quality data from DBCLS SRA