SRX185917
GSM1001005: DS017 MCF-7 foxm1 DMSO 7; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXM1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast adenocarcinoma cells, control, FOXM1 ChIP
cell_line
MCF-7
cell_type
ER-positive breast adenocarcinoma cells
treatment
DMSO
chip_target
FOXM1
replicate
7

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33887037
Reads aligned (%)
97.9
Duplicates removed (%)
2.8
Number of peaks
3167 (qval < 1E-05)

hg19

Number of total reads
33887037
Reads aligned (%)
97.2
Duplicates removed (%)
3.9
Number of peaks
3165 (qval < 1E-05)

Base call quality data from DBCLS SRA