Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXM1

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-231 breast adenocarcinoma cells, thiostrepton, FOXM1 ChIP
cell_line
MDA-MB-231
cell_type
ER-negative breast adenocarcinoma cells
treatment
thiostrepton
chip_target
FOXM1
replicate
2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
31168350
Reads aligned (%)
89.6
Duplicates removed (%)
7.5
Number of peaks
4728 (qval < 1E-05)

hg38

Number of total reads
31168350
Reads aligned (%)
90.5
Duplicates removed (%)
7.1
Number of peaks
4762 (qval < 1E-05)

Base call quality data from DBCLS SRA