SRX185911
GSM1000999: DS005 MDA-MB-231 foxm1 DMSO 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXM1

Cell type

Cell type Class
Breast
Cell type
MDA-MB-231
Primary Tissue
Breast
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MDA-MB-231 breast adenocarcinoma cells, control, FOXM1 ChIP
cell_line
MDA-MB-231
cell_type
ER-negative breast adenocarcinoma cells
treatment
DMSO
chip_target
FOXM1
replicate
1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28215261
Reads aligned (%)
98.1
Duplicates removed (%)
5.8
Number of peaks
4779 (qval < 1E-05)

hg19

Number of total reads
28215261
Reads aligned (%)
97.4
Duplicates removed (%)
6.7
Number of peaks
4759 (qval < 1E-05)

Base call quality data from DBCLS SRA