Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXM1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 breast adenocarcinoma cells, thiostrepton, FOXM1 ChIP
cell_line
MCF-7
cell_type
ER-positive breast adenocarcinoma cells
treatment
thiostrepton
chip_target
FOXM1
replicate
2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
33893474
Reads aligned (%)
95.2
Duplicates removed (%)
3.2
Number of peaks
1025 (qval < 1E-05)

hg38

Number of total reads
33893474
Reads aligned (%)
97.0
Duplicates removed (%)
2.1
Number of peaks
589 (qval < 1E-05)

Base call quality data from DBCLS SRA