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Colocalization
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Thymus
ATCC
MeSH
RIKEN BRC
SRX185882
GSM1000204: LICR ChipSeq Thymus Input adult-8wks
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
Thymus
NA
NA
Attributes by original data submitter
Sample
source_name
Thymus
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Thymus
cell organism
mouse
cell description
Thymus
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002477
labversion
3/14/11 Lane 1
replicate
1
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse
Sequenced DNA Library
library_name
GSM1000204: LICR_ChipSeq_Thymus_Input_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
29664057
Reads aligned (%)
93.0
Duplicates removed (%)
10.8
Number of peaks
884 (qval < 1E-05)
mm9
Number of total reads
29664057
Reads aligned (%)
92.8
Duplicates removed (%)
10.9
Number of peaks
973 (qval < 1E-05)
Base call quality data from
DBCLS SRA