Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Gonad

Cell type

Testis

MeSH Description

The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Sample

source_name

Testis

biomaterial_provider

1)LICR lab; 2)CSHL lab

lab

LICR-m

lab description

Ren - Ludwig Institue for Cancer Research

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

Testis

cell organism

mouse

cell description

Testis

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

age

adult-8wks

age description

Adult 8 weeks

age

adult-8wks

age description

Adult 8 weeks

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEM002490

labversion

2/9/11 Lane 3

replicate

1

softwareversion

Bowtie

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM1000203: LICR_ChipSeq_Testis_Input_adult-8wks

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

14188794

Reads aligned (%)

92.0

Duplicates removed (%)

17.2

Number of peaks

575 (qval < 1E-05)

mm9

Number of total reads

14188794

Reads aligned (%)

91.8

Duplicates removed (%)

17.4

Number of peaks

637 (qval < 1E-05)