SRX185879
GSM1000201: LICR ChipSeq BAT Input adult-24wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adipocyte
Cell type
Brown adipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
BAT
biomaterial_provider
Jerrold M. Olefsky Lab, UCSD
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
BAT
cell organism
mouse
cell description
Brown adipocytes tissue
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-24wks
age description
Adult 24 weeks
age
adult-24wks
age description
Adult 24 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002656
labversion
7/13/2010 Lane 5
replicate
1
softwareversion
HCS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000201: LICR_ChipSeq_BAT_Input_adult-24wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52019512
Reads aligned (%)
90.6
Duplicates removed (%)
10.9
Number of peaks
830 (qval < 1E-05)

mm9

Number of total reads
52019512
Reads aligned (%)
90.5
Duplicates removed (%)
11.0
Number of peaks
899 (qval < 1E-05)

Base call quality data from DBCLS SRA