SRX185878
GSM1000200: LICR ChipSeq MEL Input immortalized

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
immortalized
age description
Immortal cells
age
immortalized
age description
Immortal cells
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002652
labversion
6/8/2011 Lane 5-1
replicate
1
softwareversion
HCS
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1000200: LICR_ChipSeq_MEL_Input_immortalized
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20618464
Reads aligned (%)
96.2
Duplicates removed (%)
8.9
Number of peaks
682 (qval < 1E-05)

mm9

Number of total reads
20618464
Reads aligned (%)
96.0
Duplicates removed (%)
9.0
Number of peaks
738 (qval < 1E-05)

Base call quality data from DBCLS SRA