SRX185843
GSM1000122: LICR ChipSeq CH12 H3K79me2 immortalized

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

source_name
CH12
biomaterial_provider
Weissman lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
H3K79me2
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription
H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname
Active Motif
antibody vendorid
39143
age
immortalized
age description
Immortal cells
age
immortalized
age description
Immortal cells
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM003164
labversion
Pooled & filtered
softwareversion
MACS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000122: LICR_ChipSeq_CH12_H3K79me2_immortalized
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
75398434
Reads aligned (%)
94.7
Duplicates removed (%)
69.5
Number of peaks
2627 (qval < 1E-05)

mm9

Number of total reads
75398434
Reads aligned (%)
94.4
Duplicates removed (%)
69.6
Number of peaks
2638 (qval < 1E-05)

Base call quality data from DBCLS SRA