SRX185841
GSM1000120: LICR ChipSeq B-cell (CD43-) Input adult-8wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
B-cell_(CD43-)
biomaterial_provider
M. Bender (FHCRC)
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
B-cell_(CD43-)
cell organism
mouse
cell description
mouse spleen B cells, CD43-,CD11b-
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM003163
labversion
06/08/2011 FISH A Lane 4-10
replicate
1
softwareversion
HCS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000120: LICR_ChipSeq_B-cell_(CD43-)_Input_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22799885
Reads aligned (%)
97.3
Duplicates removed (%)
10.9
Number of peaks
690 (qval < 1E-05)

mm9

Number of total reads
22799885
Reads aligned (%)
97.1
Duplicates removed (%)
11.0
Number of peaks
813 (qval < 1E-05)

Base call quality data from DBCLS SRA