Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
WholeBrain
biomaterial_provider
1)Stam lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
WholeBrain
cell organism
mouse
cell description
Whole Brain
cell sex
U
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
E14.5
age description
Embryonic day 14.5
age
E14.5
age description
Embryonic day 14.5
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002494
labversion
10/28/10 Lane 4
replicate
2
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000098: LICR_ChipSeq_WholeBrain_Input_E14.5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
76800849
Reads aligned (%)
53.1
Duplicates removed (%)
57.8
Number of peaks
912 (qval < 1E-05)

mm9

Number of total reads
76800849
Reads aligned (%)
53.0
Duplicates removed (%)
57.8
Number of peaks
924 (qval < 1E-05)

Base call quality data from DBCLS SRA