SRX185812
GSM1000091: LICR ChipSeq CH12 H3K36me3 immortalized

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)

Attributes by original data submitter

Sample

source_name
CH12
biomaterial_provider
Weissman lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
line
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
H3K36me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription
Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname
Abcam
antibody vendorid
ab9050
age
immortalized
biomaterial_type
immortalized cell line
age
immortalized
biomaterial_type
immortalized cell line
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM003164
labversion
Pooled & filtered
softwareversion
MACS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000091: LICR_ChipSeq_CH12_H3K36me3_immortalized
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
44272731
Reads aligned (%)
90.1
Duplicates removed (%)
21.0
Number of peaks
18547 (qval < 1E-05)

mm9

Number of total reads
44272731
Reads aligned (%)
89.8
Duplicates removed (%)
21.0
Number of peaks
18544 (qval < 1E-05)

Base call quality data from DBCLS SRA