SRX185807
GSM1000086: LICR ChipSeq Limb H3K4me3 E14.5

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Limb
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
Limb
cell organism
mouse
cell description
Limb
cell sex
U
antibody
H3K4me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me3
antibody targetdescription
Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.
antibody vendorname
Millipore
antibody vendorid
07-473
age
E14.5
age description
Embryonic day 14.5
age
E14.5
age description
Embryonic day 14.5
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002482
labversion
Pooled & filtered
softwareversion
MACS
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000086: LICR_ChipSeq_Limb_H3K4me3_E14.5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
64210580
Reads aligned (%)
82.7
Duplicates removed (%)
45.5
Number of peaks
36145 (qval < 1E-05)

mm9

Number of total reads
64210580
Reads aligned (%)
82.6
Duplicates removed (%)
45.5
Number of peaks
36506 (qval < 1E-05)

Base call quality data from DBCLS SRA