Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestines
MeSH Description
The section of the alimentary canal from the STOMACH to the ANAL CANAL. It includes the LARGE INTESTINE and SMALL INTESTINE.

Attributes by original data submitter

Sample

source_name
SmIntestine
biomaterial_provider
1)LICR lab; 2)CSHL lab
lab
LICR-m
lab description
Ren - Ludwig Institue for Cancer Research
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
SmIntestine
cell organism
mouse
cell description
Small Intestine
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEM002486
labversion
7/28/10 6
replicate
1
softwareversion
Bowtie
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1000080: LICR_ChipSeq_SmIntestine_Input_adult-8wks
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
57657120
Reads aligned (%)
91.1
Duplicates removed (%)
11.7
Number of peaks
898 (qval < 1E-05)

mm9

Number of total reads
57657120
Reads aligned (%)
90.9
Duplicates removed (%)
11.7
Number of peaks
1037 (qval < 1E-05)

Base call quality data from DBCLS SRA