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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MYC
wikigenes
PDBj
CellType: BJ
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX185776
GSM1000576: c-Myc ChIP-Seq at 48hrs Mock Induction; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MYC
Cell type
Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
BJ_c-Myc ChIP-Seq_48hr_mockinduction
cell line
BJ
cell type
foreskin fibroblast cell
genotype/variation
MOCK, not-infected
time point
48hrs mock induction with 1µg/ml dox
chip antibody
c-Myc
chip antibody vendor
R&D
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
48359557
Reads aligned (%)
87.9
Duplicates removed (%)
23.1
Number of peaks
2144 (qval < 1E-05)
hg19
Number of total reads
48359557
Reads aligned (%)
86.8
Duplicates removed (%)
25.1
Number of peaks
2195 (qval < 1E-05)
Base call quality data from
DBCLS SRA