Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU5F1

Cell type

Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
BJ_Oct4 ChIP-Seq_48hr_mockinduction
cell line
BJ
cell type
foreskin fibroblast cell
genotype/variation
MOCK, not-infected
time point
48hrs mock induction with 1µg/ml dox
chip antibody
Oct4
chip antibody vendor
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
50397894
Reads aligned (%)
57.0
Duplicates removed (%)
34.6
Number of peaks
1486 (qval < 1E-05)

hg38

Number of total reads
50397894
Reads aligned (%)
59.3
Duplicates removed (%)
32.7
Number of peaks
1338 (qval < 1E-05)

Base call quality data from DBCLS SRA