Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Clamp

Cell type

Cell type Class
Larvae
Cell type
3rd instar
NA
NA

Attributes by original data submitter

Sample

source_name
Female Melanogaster CLAMP ChIPseq
genotype
wild type
chip antibody
anti-CLAMP (SDix, Cat# 4988.00.02, Lot# G3131-080A02; PMID 22844249)
developmental stage
3rd instar larvae

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm3

Number of total reads
5639720
Reads aligned (%)
17.7
Duplicates removed (%)
77.6
Number of peaks
523 (qval < 1E-05)

dm6

Number of total reads
5639720
Reads aligned (%)
16.7
Duplicates removed (%)
78.9
Number of peaks
679 (qval < 1E-05)

Base call quality data from DBCLS SRA