Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Larvae
Cell type
3rd instar

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Female Melanogaster CLAMP input
genotype
wild type
chip antibody
none
developmental stage
3rd instar larvae

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard ChIP seq protocol - larvae were homogenized in liquid nitrogen followed by lysis and sonication, chromatin was immunoprecipitated with CLAMP antibody. ChIP-seq libraries were prepared with the illumina TruSeq DNA Prep kit

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
16543983
Reads aligned (%)
95.9
Duplicates removed (%)
58.8
Number of peaks
1361 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA