Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Larvae
Cell type
3rd instar
NA
NA

Attributes by original data submitter

Sample

source_name
Female Melanogaster CLAMP input
genotype
wild type
chip antibody
none
developmental stage
3rd instar larvae

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard ChIP seq protocol - larvae were homogenized in liquid nitrogen followed by lysis and sonication, chromatin was immunoprecipitated with CLAMP antibody. ChIP-seq libraries were prepared with the illumina TruSeq DNA Prep kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
25208995
Reads aligned (%)
92.5
Duplicates removed (%)
93.8
Number of peaks
2021 (qval < 1E-05)

dm3

Number of total reads
25208995
Reads aligned (%)
92.6
Duplicates removed (%)
92.5
Number of peaks
2885 (qval < 1E-05)

Base call quality data from DBCLS SRA