Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 Input
cell line
A549
cell type
NSCLC
passages
P4
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
28054060
Reads aligned (%)
85.9
Duplicates removed (%)
34.6
Number of peaks
510 (qval < 1E-05)

hg19

Number of total reads
28054060
Reads aligned (%)
85.2
Duplicates removed (%)
35.3
Number of peaks
734 (qval < 1E-05)

Base call quality data from DBCLS SRA