SRX184874
GSM999214: A549 Nicotine; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SAG

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 Nicotine stimulated
cell line
A549
cell type
NSCLC
passages
P4
chip antibody
Beta arrestin-1 Ab

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24111603
Reads aligned (%)
94.1
Duplicates removed (%)
47.6
Number of peaks
684 (qval < 1E-05)

hg38

Number of total reads
24111603
Reads aligned (%)
94.8
Duplicates removed (%)
46.7
Number of peaks
448 (qval < 1E-05)

Base call quality data from DBCLS SRA