SRX184863
GSM999182: Treg Foxp3 ChIP Rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Foxp3

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
Treg Foxp3 ChIP
cell type
Foxp3-positive CD4+ T cells
cell source
Primary Mouse T cells isolated ex-vivo and sorted

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31418720
Reads aligned (%)
79.2
Duplicates removed (%)
12.7
Number of peaks
2497 (qval < 1E-05)

mm9

Number of total reads
31418720
Reads aligned (%)
79.0
Duplicates removed (%)
12.8
Number of peaks
2491 (qval < 1E-05)

Base call quality data from DBCLS SRA