Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ep300

Cell type

Cell type Class
Blood
Cell type
Th1 Cells
MeSH Description
A subset of helper-inducer T-lymphocytes which synthesize and secrete INTERLEUKIN-2; INTERFERON-GAMMA; and INTERLEUKIN-12. Due to their ability to kill antigen-presenting cells and their lymphokine-mediated effector activity, Th1 cells are associated with vigorous delayed-type hypersensitivity reactions.

Attributes by original data submitter

Sample

source_name
primary CD4+ T cells from spleen and lymph nodes
strain
C57BL/6J
genotype/variation
wild type
cell type
in vitro polarized T helper2 cells for 5 days with control vector.
passages
Gata3 overexpression vector was made in Th2 cells.
chip antibody
anti-p300

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
26422353
Reads aligned (%)
97.9
Duplicates removed (%)
21.6
Number of peaks
47093 (qval < 1E-05)

mm9

Number of total reads
26422353
Reads aligned (%)
97.8
Duplicates removed (%)
21.8
Number of peaks
47046 (qval < 1E-05)

Base call quality data from DBCLS SRA