SRX183906
GSM999004: CD4 H3K27ac donor E; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+CD25-CD45 RA+ naive conventional T cells
cell type
CD4+CD25-CD45 RA+ naive conventional T cells
donor
E
donor gender
male
chip antibody
H3K27ac
chip antibody manufacturer
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35342744
Reads aligned (%)
96.5
Duplicates removed (%)
58.6
Number of peaks
20675 (qval < 1E-05)

hg19

Number of total reads
35342744
Reads aligned (%)
95.9
Duplicates removed (%)
59.6
Number of peaks
20658 (qval < 1E-05)

Base call quality data from DBCLS SRA