SRX183897
GSM998995: CD19 H3K4me1 donor A; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
B-cell (CD19+)
Tissue
Blood
Lineage
primaryCells
Description
B Cell , CD19+

Attributes by original data submitter

Sample

source_name
CD19+ B cells
cell type
CD19+ B cells
donor
A
donor gender
male
chip antibody
H3K4me1
chip antibody manufacturer
abcam

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39232209
Reads aligned (%)
98.4
Duplicates removed (%)
17.5
Number of peaks
9745 (qval < 1E-05)

hg19

Number of total reads
39232209
Reads aligned (%)
97.9
Duplicates removed (%)
18.1
Number of peaks
9418 (qval < 1E-05)

Base call quality data from DBCLS SRA