Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: B-cell (CD19+)
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX183896
GSM998994: CD19 H3K4me1 donor C; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Blood
Cell type
B-cell (CD19+)
Tissue
Blood
Lineage
primaryCells
Description
B Cell , CD19+
Attributes by original data submitter
Sample
source_name
CD19+ B cells
cell type
CD19+ B cells
donor
C
donor gender
male
chip antibody
H3K4me1
chip antibody manufacturer
abcam
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
36037705
Reads aligned (%)
95.0
Duplicates removed (%)
65.0
Number of peaks
9455 (qval < 1E-05)
hg19
Number of total reads
36037705
Reads aligned (%)
94.5
Duplicates removed (%)
65.7
Number of peaks
9364 (qval < 1E-05)
Base call quality data from
DBCLS SRA