Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Input DNA
strain
Oregon R (wild type)
tissue
whole-embryo
time point
2-4hr after egg laying (AEL)
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm6

Number of total reads
9429879
Reads aligned (%)
97.6
Duplicates removed (%)
19.9
Number of peaks
1770 (qval < 1E-05)

dm3

Number of total reads
9429879
Reads aligned (%)
97.8
Duplicates removed (%)
13.7
Number of peaks
2062 (qval < 1E-05)

Base call quality data from DBCLS SRA