Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
twi

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Twist ChIP-Seq from 2-4 h wild type embryos
strain
Oregon R (wild type)
tissue
whole-embryo
time point
2-4hr after egg laying (AEL)
chip antibody
Anti Twist

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
32492092
Reads aligned (%)
42.1
Duplicates removed (%)
54.9
Number of peaks
15046 (qval < 1E-05)

dm6

Number of total reads
32492092
Reads aligned (%)
39.7
Duplicates removed (%)
57.4
Number of peaks
16534 (qval < 1E-05)

Base call quality data from DBCLS SRA