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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: twi
wikigenes
PDBj
CellType: 2-4h embryos
ATCC
MeSH
RIKEN BRC
SRX183883
GSM998950: Twist ChIP-Seq from 2-4 h wild type embryos, rep3; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
twi
Cell type
Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
Twist ChIP-Seq from 2-4 h wild type embryos
strain
Oregon R (wild type)
tissue
whole-embryo
time point
2-4hr after egg laying (AEL)
chip antibody
Anti Twist
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
32492092
Reads aligned (%)
93.0
Duplicates removed (%)
57.4
Number of peaks
16534 (qval < 1E-05)
dm3
Number of total reads
32492092
Reads aligned (%)
93.3
Duplicates removed (%)
54.9
Number of peaks
15046 (qval < 1E-05)
Base call quality data from
DBCLS SRA