Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

source_name
ovaries
genotype
vasa-GAL80[ts]/+;;da-GAL4/shpiwi
embryonic temperature
28°C

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
100 dissected ovaries were crosslinked with 1.8% formaldehyde for 10 min, and the prepared chromatin was sonicated. One-third was used for immunoprecipitation by H3K9me3 antibody. After decrosslinking, DNA was extracted and used for library preparation for sequencing. The ChIP-seq experiments were performed in three biological replicates. Library preparation and 50nt single-read sequencing were performed by Donnelly Sequencing Centre (Toronto) on an Illumina HiSeq2500.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

dm6

Number of total reads
28659415
Reads aligned (%)
94.0
Duplicates removed (%)
48.3
Number of peaks
4590 (qval < 1E-05)

dm3

Number of total reads
28659415
Reads aligned (%)
94.3
Duplicates removed (%)
42.8
Number of peaks
10303 (qval < 1E-05)

Base call quality data from DBCLS SRA