Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Blood

Cell type

Thymus

NA

NA

Sample

age

0 day

dev stage

postnatal

donor ID

ENCDO956IXV

tissue

thymus

sex

pooled male and female

health state

healthy

sample type

tissue

lab

John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

document: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf See ENCODE portal

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

280867893

Reads aligned (%)

72.0

Duplicates removed (%)

57.2

Number of peaks

51199 (qval < 1E-05)

mm9

Number of total reads

280867893

Reads aligned (%)

72.0

Duplicates removed (%)

57.5

Number of peaks

51308 (qval < 1E-05)