Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Lung

Cell type

Lung

MeSH Description

Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Sample

age

0 day

dev stage

postnatal

donor ID

ENCDO956IXV

tissue

lung

sex

not collected

sample type

tissue

lab

John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

document: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf See ENCODE portal

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

427114212

Reads aligned (%)

54.9

Duplicates removed (%)

50.3

Number of peaks

82251 (qval < 1E-05)

mm9

Number of total reads

427114212

Reads aligned (%)

54.9

Duplicates removed (%)

50.4

Number of peaks

82282 (qval < 1E-05)