Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

Kidney

MeSH Description

Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Sample

age

0 day

dev stage

postnatal

donor ID

ENCDO956IXV

tissue

kidney

sex

not collected

sample type

tissue

lab

John Stamatoyannopoulos, UW

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

document: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf See ENCODE portal

Sequencing Platform

instrument_model

NextSeq 500

mm10

Number of total reads

164794289

Reads aligned (%)

77.6

Duplicates removed (%)

9.6

Number of peaks

80065 (qval < 1E-05)

mm9

Number of total reads

164794289

Reads aligned (%)

77.5

Duplicates removed (%)

9.7

Number of peaks

80087 (qval < 1E-05)