Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trl

Cell type

Cell type Class
Cell line
Cell type
S2
Source
Oregon R
Developmental Stage
late embryonic stage

Attributes by original data submitter

Sample

source_name
S2 cells depleted of GAF by RNAi
cell line
ModENCODE S2-DRSC (lot 181A1)
antibody
anti-GAF

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
32571684
Reads aligned (%)
15.9
Duplicates removed (%)
28.5
Number of peaks
4145 (qval < 1E-05)

dm6

Number of total reads
32571684
Reads aligned (%)
15.1
Duplicates removed (%)
28.6
Number of peaks
3071 (qval < 1E-05)

Base call quality data from DBCLS SRA